GenomicLinks.

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The "BEDPE" file should have six tab-separated(TSV) columns mandatory. These columns represent the chromosome and positions for each end of the paired-end data. Any additional columns are ignored, as well as the header. Intervals are adjusted to span 2,500 bp, centered around their original midpoint.

chr1 start1 end1 chr2 start2 end2
chr1 15550 24578 chr1 9219 15110
chr1 19397 24527 chr1 11640 13053
chr1 16980 22286 chr1 9739 14424
chr1 14491 29146 chr1 7412 14763
chr1 17843 23308 chr1 5852 14835
chr2 10188 25358 chr2 8311 14027

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